Scaffold Ga0307379_10025275

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_10025275
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7264
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030408	Metagenome	185	Y
F034920	Metagenome	173	Y
F059883	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_100252751	F034920	GGAGG	MTKNKKDKDWIAKADIKKGAFTKKAAKKGITTAQLQENVLANPEDY
Ga0307379_1002527510	F059883	N/A	MTEDNKRYHLIISVDEKYAIVNALAFYHAHHTQGALMDEDEREQYMLAFQEDGPTLVDSLATKVANTF
Ga0307379_100252759	F030408	GAG	MGLHIALITDRTGRYAHVWGSAPTWSQFHDQLEDAGCEVIEDQTIEWDGCDQDEIAEDCLSIHQLLNDTTFIAH