Scaffold Ga0307379

Basic Information
Taxon OID	3300031565 Open in IMG/M
Scaffold ID	Ga0307379_10015628 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031565 Open in IMG/M

Scaffold ID

Ga0307379_10015628 Open in IMG/M

Source Dataset Name

Soil microbial communities from Risofladan, Vaasa, Finland - UN-2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9701
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

9701

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Finland: Risofladan, Vaasa

Coordinates

Lat. (^o)

63.0472

Long. (^o)

21.7116

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030356	Metagenome	185	Y
F080939	Metagenome	114	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_100156281	F080939	N/A	PEDPIREKPARDLSLPDRSAVQNSFYCAVVPHPNATMRAQNKKVQTIFRKYNNGMISYEVLGPIDPIPHGEKIDKYGRTRPEVIKMIDPRTGEQIAVRADGTMTPQGKKLRAMMQTFKVNRSNQWDVWVDREFVTLNDRIANNPWELT
Ga0307379_100156285	F030356	AGGA	MLDLKNIVVSNINKNIKTNSRFVHMKSLMDTKMASYLRFLGTKNSVNRASDYHYLCLAVSDSTEPVNGMDYIHPSVKPAVDYATAVITKGLISNGTINFDFVPENERDDEAARQATNMVSRVVNEMNDPHFIIERWVMDAAMHKNGMMMIKPIREQVVRYIENSGTLDQLKAFELQAEESGLTVLRQSRRKERVDMEAVIAEMQQALPAQQQQFIADRAGEYLTGIEEIDVEEGDIGSQIDSLEPDTETASIEASDEQQDLLNDSFKRNTIYRAKYKLTGWGINIKFHPIQQHYWICDPTVPEIKDQPFCGFFDTMSIAEATELYPGLDLEEFTATASYSEGVFEAGSQLNNLAIHARDSVPTNGVPVGAGSNADPNSRQVTVVTVWNRYDVDNDGELELVELIYSGDYVISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYLTAAARAEIQLGLLTATPRIGVKPDRVDFEMIQDGESAIFILDSKFDPSKDIYQMPPPSGNLAFLETAMQRIQQDTMAMIGMTQPTDVFNPEVMAPGNSGVKLQMALTPNQIIQDNTVRNAAEGLKQSLWLVWRTLIQYGDDYGVKKLASECIPSQEPVFLDYMSWDDMNFCDRKQIHLELALGMLSEENALARLQIIRKAQTELYATTQQMAAAGTLSPEIYQKIKRPFADTLYVLGVKDCDTYLPSDDEIGKMIASAEQAAKTKTPSPDDQKKMADAELAKAKTAQVISEVQGTDPDTQLNYMDLAMGRNQDYGH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307379_10015628

Overview

Ecosystem & Geography

Associated Families

Sequences