NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0318573_10314590

Scaffold Ga0318573_10314590


Overview

Basic Information
Taxon OID3300031564 Open in IMG/M
Scaffold IDGa0318573_10314590 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)839
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003695Metagenome / Metatranscriptome473Y
F025238Metagenome / Metatranscriptome202Y
F031376Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0318573_103145901F003695AGGAGGMAREPDSLAVRFAAVLALAVIILVVMTLAAPPYPVNDTAAQTPSSDAIYRAQYLNLY
Ga0318573_103145902F031376GAGVRAVSFAGDAMRQLTSIATLIVALVTPAAARSRLVVLDRPTLACSDQQALETVLTLARLYDGPAFRDHTRSYGCMWIQPDDGPLAVVGGSAWGNAQVMVPGAGLFWIRR
Ga0318573_103145903F025238AGGAGMRINVWVVLIVLIALFAVTRLLRYHQDTQRICADDPSASVCAQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.