Scaffold Ga0318528_10039781

Overview

Basic Information

• Taxon OID: 3300031561
• Scaffold ID: Ga0318528_10039781
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2347
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002617	Metagenome / Metatranscriptome	542	Y
F009379	Metagenome / Metatranscriptome	318	Y
F025424	Metagenome / Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318528_100397812	F002617	GAG	MTDFDPERFTLRQAAQARDDFAQIMDELDFVKEQLARLPTRRDQAFVPLKIMFGSAVLSAALVILWLEAFWRHCL
Ga0318528_100397814	F009379	N/A	VWSVKFFHDLRSLTPTRLAYISRSSEAEVAQRAAECMGDEEAARVEICRVLLNPPILAEGAEYWLD
Ga0318528_100397815	F025424	GGAG	MRDEIARLVKALEPSFATPEDAELAASMMVMALRHEFSEPIKDEDRPRYQAALERLPKGSSATPRVVFVSPYDQKTDPHWRVMFTNGPMRYESSQRFGSMAEAETYVTDFLARLRGEINRPE