Scaffold Ga0318528_10022751

Overview

Basic Information

• Taxon OID: 3300031561
• Scaffold ID: Ga0318528_10022751
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3016
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006567	Metagenome / Metatranscriptome	370	Y
F007602	Metagenome / Metatranscriptome	348	Y
F035263	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318528_100227512	F035263	N/A	MRCISCGAELKFMQSGLDNITMVPSDKYCVFLCENCDRPPVNPDGALPPTEPEPARSGLAASLRPDERASDSTTRPTLVPSEGDLDECEILLRRAIEMVRGSTRWSQPTRSLTDRMPGRSLSSRVVQIHHDRGGATYVATDAKSGLCVLRHRDPARLRAMCNRIGWQVLEADIPTQTTER
Ga0318528_100227513	F007602	GAG	MKQPTPSDFLVEVKEAYVSVFFKPSDSHYSFGRLADPEDIARYGPLSQSPNVRDGKTGDTGIYPSDEVARMAHTLAVKAVTTT
Ga0318528_100227515	F006567	N/A	MLTSEDHRQLAERCIRLAKECTKPSVAEHLMTLAANYLELAERALRLREPATAVRRQHLKAVQKE