NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308135_1002299

Scaffold Ga0308135_1002299


Overview

Basic Information
Taxon OID3300031559 Open in IMG/M
Scaffold IDGa0308135_1002299 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_937_33.10 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3126
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)223
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024444Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0308135_10022994F024444GGAMAQEDYTPLLIGAGALLILAKWGFGNIPQIPNPLPAIGGAVAGTADELTGGLQKDRAESLPEFLFELDVPFSDKRFPLAPGLVPDRGTSFSTGGPLDPGGQMAEVPWVAMDIVVPDQTIGSFLSEIDLPGLPAYDLRNAPKDIWKGLF

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