Scaffold Ga0308148_1012547

Overview

Basic Information

• Taxon OID: 3300031557
• Scaffold ID: Ga0308148_1012547
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_328_20m (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 952
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 80.9595
  • Long. (^o): -132.1842
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001145	Metagenome / Metatranscriptome	765	Y
F001219	Metagenome / Metatranscriptome	744	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308148_10125471	F001219	N/A	ERAEFINYTLRKSTILLTFGYEKLTTCVGLLTAEIDEMNRQIKLVKNYTNSKFEKEIEVVQKENMTILSQLKGDLSVKSAYLFSNVTNDLISLTDKFFTKKFQSAS
Ga0308148_10125472	F001145	N/A	MNWNLFSFFLNSEGSFIEFNTNILETNIINIFLLFGLLFYANKVSFSGTLEERQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLHSWKTLYAKDKVEIVNSKYKTVKTGLTETFSTTENLITNFENKAFVALQRYIIFITASKILRKFFFLSEKEQSKLIEVSISNFGGS