Scaffold Ga0308142_1017506

Overview

Basic Information

• Taxon OID: 3300031556
• Scaffold ID: Ga0308142_1017506
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_538_SCM (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1031
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000457	Metagenome / Metatranscriptome	1112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308142_10175062	F000457	N/A	RLQKNHVNLSFWPEVGVAIMNGGKKHIAEFQKCFADPNCRVDPGGVYYDWVLNKANYMEQCRKAGIPMIPTVIYKNGFDPKRCLEDVQKQGWDKFFCKVGHFSFFGNGAINGKTEDFLGNGKKVKELQKYAKENRTSKTFLLQPYMLKPNGEVFDEVRNFFIDGQWRYSVFTHGTDESDAGYYEEPDGPRKEACKALAEKVYQEVLKTATWEGKRQTPLLNRIDIGVIPKKGGNSLHKTDNKYFLNEVELICTTWLDRYAPINVSDVVAQSAVKHSLELLVGMLNAKRRLPDEANVRKVINVLNNRLGPFQHIRLKK