NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318571_10217208

Scaffold Ga0318571_10217208


Overview

Basic Information
Taxon OID3300031549 Open in IMG/M
Scaffold IDGa0318571_10217208 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)691
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001216Metagenome / Metatranscriptome745Y
F006088Metagenome / Metatranscriptome382Y
F006226Metagenome / Metatranscriptome378Y

Sequences

Protein IDFamilyRBSSequence
Ga0318571_102172081F006226N/ARSIGGIVMNTAMARRLALGDRVVWIGKDYESSGQGTITRITAHQVEVRWEDETARRYRRAQLHNLRHRNLVCELHEARGA
Ga0318571_102172082F006088AGGAMSSERNTCLQKADDAKQRAAQATEPFMKSAYEKVAEHWTLLARLESLIGNEKTNEDA
Ga0318571_102172083F001216AGGGGGMESDYLILRRATAFRPSGKWNDDDYDVLCNGVVVGRIMQAAA
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