NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318571_10013176

Scaffold Ga0318571_10013176


Overview

Basic Information
Taxon OID3300031549 Open in IMG/M
Scaffold IDGa0318571_10013176 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2014
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030860Metagenome / Metatranscriptome184Y
F056769Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0318571_100131763F056769GGAGGMRWRQSFIAEVSRALQQLGLRACPICGSADALGIGRFPAFWLEGGPRTDGDDLSLGEDHDYDLIFAVRIECTACGHLMLFNASKYRTGDEPILVRDLAEQEGQLRE
Ga0318571_100131764F030860GGAGGMSAWLSKWAPASGGLAGMLVAVAFFASPNPPGADATGAQVIAWYGSHHGSDFVFDVLGGLAVLFLVLFAVALARQVRPGDRWLAHGALAGAVFGGVGFLTSIGFDAVLAQAHDHLTPASAQTLSLLANDFFLPIVVGFALFGLLTGLAVVAGRILPAWMGWVMFVAGLTCLAGPLGFFGVLATVLWVLAAGIWMVRQGPPVPDRVAQLAQDRVAASFGVSPDRPDSRATTPAPGTVARVGLYQMMSCAVPRTGSTTMRICCAA
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