Scaffold Ga0318571_10012709

Overview

Basic Information

• Taxon OID: 3300031549
• Scaffold ID: Ga0318571_10012709
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2039
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003176	Metagenome / Metatranscriptome	503	Y
F046668	Metagenome	151	Y
F049822	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318571_100127091	F003176	N/A	ATRLFTEALDGRLEAAGDDAAELTWPGGKRIRLVRKDGLPLGGSLHHVRFTRAEGAFSAQDRERAGLLAKRLGLTVELAG
Ga0318571_100127093	F049822	N/A	VTDTARLAPLDTTHHGGTVWAVPGRAPGQTRNLRHLIWNGPGDYVHLCYGGIADGSTEYPGEDMGRVSGRCPAFKQAQAAVDAYVSGRRI
Ga0318571_100127094	F046668	AGGA	VADAGEPDAGEPLSPQAADLVRRIARGILDEPADLMDRVYAAVSAAADEPLRSEPVLAAEVAASTRSN