Scaffold Ga0318538_10048331

Overview

Basic Information

• Taxon OID: 3300031546
• Scaffold ID: Ga0318538_10048331
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2068
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004853	Metagenome / Metatranscriptome	421	Y
F009284	Metagenome / Metatranscriptome	320	Y
F022254	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318538_100483312	F009284	AGGA	MTRDEMVEWFKSAPMGSRHQRMLWAAHKIARLTGATEGGAYQVLLGALIEAERLPRGSIPGFSMTADE
Ga0318538_100483314	F022254	GGTGG	MAKPPRDRRTQPARQPTYKRLSARVDRLEDAISHFYNVINELRRRVSTLEKKLKPLAKAELH
Ga0318538_100483315	F004853	AGGCGG	VRGRIANAKSFGWAIYAAGFAIWLFGYLSAGHAPLFDWNATTPWWISSFVPNLEAELGLALIFASVIPIYGRAVWGNLARLFAFAALLVFGAVTLAWWGFLAWLIWHVI