Scaffold Ga0318538_10044832

Overview

Basic Information

• Taxon OID: 3300031546
• Scaffold ID: Ga0318538_10044832
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2137
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000284	Metagenome / Metatranscriptome	1378	Y
F000792	Metagenome / Metatranscriptome	890	Y
F001673	Metagenome / Metatranscriptome	654	Y
F075541	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318538_100448323	F001673	GGCGG	MASFVAVLLVLALGHRWSVTVSWFASDKTCRERHATPWFAQRLDIDCGRLLRARLWKLYDEGQFGRSRRGQGAVEYMKQLLEHPDE
Ga0318538_100448324	F000792	AGG	MREHLLLFCLLGLVLAATIILMIAPGAVTWALALIE
Ga0318538_100448325	F000284	AGGAGG	LKKLAATIALLCVSNSVPAHDMYSNLRDREGHLCCGGQDCKPVETVILPNGNYYLPATDEIIPADMATPSPDDRFHHCIYYPMAKDYEPWGYPVWESTPKTRCFFAPMNSS
Ga0318538_100448326	F075541	AGG	LPNNRDLYVRALVPQTRFEWKAELGSAFNTAYTAQLGNVTYYVPSRDYGHPAYLE