Scaffold Ga0318541_10147086

Overview

Basic Information

• Taxon OID: 3300031545
• Scaffold ID: Ga0318541_10147086
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1291
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003243	Metagenome / Metatranscriptome	498	Y
F005515	Metagenome / Metatranscriptome	398	Y
F020965	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318541_101470861	F005515	N/A	MNWLLIVAILLISTAPLYAQRQQQNVAKLKADARNLVGIIGSDKTKTQTYCQIRDLSEQLIQAVQEKDRKTANALAEKLAELFKKMGPDFAALIDIEKHVDLNSRDGQEIASIVASLVRS
Ga0318541_101470862	F020965	N/A	MSGRGAEVAMKSPLVIVLVAVVLVAVGLLAVMNKACKSSQHAWCAPMATVRHHIKTG
Ga0318541_101470863	F003243	GGA	MLAPLFGYFFCMITVLTAVVVLLTSFSNISTIGNGRHHLGSPVIGRTVTVEVQRHSPVAKQQAPAEDVSPVVATAKADTKKIKHYKPKVLARQRDNYGYWNARGYAQRGLFFR