NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318541_10098621

Scaffold Ga0318541_10098621


Overview

Basic Information
Taxon OID3300031545 Open in IMG/M
Scaffold IDGa0318541_10098621 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1566
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000257Metagenome / Metatranscriptome1447Y
F000535Metagenome / Metatranscriptome1044Y
F055936Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0318541_100986211F000535GGAMTKTLRTHFTFRVDTWTPDGESIVEHVADVEDYQVALATYRAACERWPGTPITLRQGARVIEDSRRLRVVSG
Ga0318541_100986212F000257GAGGMTRRKREINGLANEQDFPHLVELTFPPGGRSVFLEIDAFHRERRIPVRRGRNRHGAEQFHIRFCFPDAATADAFRDRFGGELLDPRTGRPRRME
Ga0318541_100986214F055936GGAGGMRKQNYVDRAKLSPARTFKCPMDVVEANNIEPAEKLV
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