Scaffold Ga0318541_10016405

Overview

Basic Information

• Taxon OID: 3300031545
• Scaffold ID: Ga0318541_10016405
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3461
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000547	Metagenome / Metatranscriptome	1037	Y
F004972	Metagenome / Metatranscriptome	416	Y
F011636	Metagenome / Metatranscriptome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318541_100164051	F011636	AGG	MPHKTLARTAAGDPLLGLVEDRFRLLKRCPACDGQDDEEMFDRRLDELQRRIRRLDERIVRTIATSTPGLLAQLRLLAAFYEESANGAGRRGSLLIQAIAEGVTQLEARRPRPPMISTGL
Ga0318541_100164052	F004972	GGAGG	MVYRSDRVVWGAVLFRTTNPEVVEGAIVRRSDRLHWTSEAAKEEVLGWMRELAQTNPTGEIDWRSAEDVTIGRFASDPNHVAVIRSMSLPLGKPPRMK
Ga0318541_100164053	F000547	GGAGG	MLTKDILLGMNILTLAGFMVMGLTLTLNRTGQAGKALSIGLMTAGTALVFVGLFAGGGFW