Scaffold Ga0318541_10015829

Overview

Basic Information

• Taxon OID: 3300031545
• Scaffold ID: Ga0318541_10015829
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3511
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000140	Metagenome / Metatranscriptome	1947	Y
F002596	Metagenome / Metatranscriptome	544	Y
F016484	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318541_100158292	F016484	AGGAG	MRVLGLVLVGALALTAPTAVHAGSLGPGSYSMPNGWDGDWHRAPGPSRQWNGGPVSPRWCPNCPSGGWVCCPRPAVPTYWVWGPSGGAFDYPFADSRSDWGLG
Ga0318541_100158293	F000140	GAGG	MPGNPREMITSAERRFPVRIRIAGPPNGLGRRHSQMTAWLDENCGADGWAMTPSGTRGVLSDALSIHFADPTLASAFVARWCVRAKVERAGGVFQVREDEPEARVGVGPHKTP
Ga0318541_100158294	F002596	GGCGG	MLALAAPAFAQVRPLTLSDATEPGSVIVFPIFINGSVRLPEGAPAPATELEIGVICPKGVGCAEHQPLKIRFHWVCGTTEANLVGSFICQETDFDVTATVFEKIVLVADGTPQNGYASGLPTKTVPRAPCAGGYLIGWVIDPASDTPIKFDGLIGDAVVRTSGTAQAGYNAIPIQADPSLANGAVVSTNGNGALMFDGAPGHYQAVTGQVLGNVRNSGNAETFLTLLTLDVKSNRPNNPIFVDLDFTSTEFICWGEVPISAINTGVFVSAPATKIGIFGVSDDTGPTTLLGLSETVENFGGRVFFNNLFNSSVPVPTHFLPTSSPNFLP