Scaffold Ga0318541_10013779

Overview

Basic Information

• Taxon OID: 3300031545
• Scaffold ID: Ga0318541_10013779
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3717
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F000440	Metagenome / Metatranscriptome	1137	Y
F030676	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318541_100137796	F000440	AGG	VRNDRLAMSKLIKYRLARRAAEFLKRVARLTGAKHVRDDTYWLRAGRRNFLVDHKFVRLISRHDKSTCFSVATDPDTPSAEVVASALLQLKNNPKLFKKWRKHPGYMFKANGKKFRNIYV
Ga0318541_100137797	F030676	GAG	MVSTTLSMVAFFALIAWRFVFKGLRPRPLARQITAPRQQHANALEQGLHILDPARVAVIPDYRFENGSDGVPITPKDRAKSYLHRIVALTGATKTSQGYVLDVGTTRFFVRDGYVRRQRDASDPKCGCERTCFSLPYNSMSQAEQIATALLQLRNNPALFDRWAAQCGAYKADGQVFTRA
Ga0318541_100137798	F000217	AGGAG	MSAKILTFSSDGDKTLLEYDPATADMEEVNKVIAEYEAKTGAQPFDMTTGERLDKVTREQNEVLMVHPIAGG