Scaffold Ga0318541_10007130

Overview

Basic Information

• Taxon OID: 3300031545
• Scaffold ID: Ga0318541_10007130
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4823
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048699	Metagenome	147	Y
F059740	Metagenome	133	N
F083141	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318541_100071303	F059740	AGGAG	MLVDSNSQRGSVVLRGIEIDLDSDIGCGFIIDCCRFCEGVLAEDKIKSKYGLNHNAWARLADNEPLVQAVETEKARRVRDGTAAREKAQWLFVQAPDVLGNILNDATTSPRHRIEAARELRQVALGGSEATPATGDRFIIRIDLTAGGGEVLEFNKPLAIGPERNEEPGTSDEHEPVR
Ga0318541_100071305	F083141	GGAGG	MQNEPWYVQRRRELEAAAPVKRKRVEPFVKVPLWWITAATKATNNHKALVCIELLYASWKAKSLTFPLPNARLQKRGITRETKRRALRDLERDGLIIVERPSRKTPIVTLILL
Ga0318541_100071307	F048699	N/A	NTFYRTCKTFRPVVPLVNVDVGMDRHFIAVMPHMIEPLASIGITVADHVLYLTITPEGGLRIIPARGRNAEGEQNEWDRTKEVALIAGMDQWVRMYSDKPNNAYNWFPAPVGRFGEPNWPEIKPARIMKMGFRDRGRLIDSTDHILVQKWAGRDRG