Scaffold Ga0318534_10246780

Overview

Basic Information

• Taxon OID: 3300031544
• Scaffold ID: Ga0318534_10246780
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1030
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004502	Metagenome / Metatranscriptome	435	Y
F026928	Metagenome / Metatranscriptome	196	Y
F068351	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318534_102467801	F068351	N/A	YQISALAPAGNAVTGIGSLATQASQEGFTVTLPAR
Ga0318534_102467802	F026928	GGAG	VLVLAGAPVLRCPFFMFWQLCVALCDAEGEGVAVLADAALTAVVPVVDDEVVDVVDDVVDDGEEWLVAALATARLPPNPTPSAPAPTAVPIMILPSREFNVSASLRSGDGPGHRTPALAAAALQ
Ga0318534_102467803	F004502	GAG	VDADAGKPSQQFRAAWQAAADAMNEWSRRISEATHEALDKIEPAIRAAVEAGRVTVTGEWRDCRCRCDTAHPNDTGVCDGRAVMTRRVGGADVSLCAPCAVAQGVAEMKL