Scaffold Ga0318534_10102122

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0318534_10102122

Scaffold Ga0318534_10102122

Overview

Basic Information
Taxon OID	3300031544 Open in IMG/M
Scaffold ID	Ga0318534_10102122 Open in IMG/M
Source Dataset Name	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1642
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002617	Metagenome / Metatranscriptome	542	Y
F020668	Metagenome / Metatranscriptome	222	Y
F023500	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318534_101021221	F020668	GAG	MKTATDRAVEAIEAAEKIFANEMGGTLGLSPAAKIALIATITAAIQAAVAEERQQLMWVP
Ga0318534_101021222	F023500	GGAG	MRASILAFAIGLALAASAQAAPLSPKPAVIELGAVPPFELARDGCGRGWHRDRWRDQSGEWHWGHCIPNGGPHDAWTAGWSHPYPDWRTELPR
Ga0318534_101021223	F002617	N/A	MADLDPERFTLRQAAQARDDFAMIMDELDFVKEQLARLPTRRDQAFVPLKIMFGSAVIGAGLVILWLEAFWQHYL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.