Scaffold Ga0318534_10028253

Overview

Basic Information

• Taxon OID: 3300031544
• Scaffold ID: Ga0318534_10028253
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3041
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000145	Metagenome / Metatranscriptome	1927	Y
F029040	Metagenome / Metatranscriptome	189	Y
F102928	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318534_100282531	F000145	AGG	MSVAPESGRNRIMIYGPKGRWHVRCRVQDGRSLAISVPVGETRVLKHFQERMP
Ga0318534_100282532	F029040	AGG	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEAEEIPDILKAIGVIKKCKAFYQCLEDRDRGKVKHCYENDRRWR
Ga0318534_100282533	F102928	AGGAG	VKKLLLVGTTVLLMVTSASAGPEAEHRGHWVAPGQWQMKDIGRNHGIIGGPGIPKCNPWVSPECARLYPGLFKKVPRPS