NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10202167

Scaffold Ga0318516_10202167


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10202167 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1147
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000315Metagenome / Metatranscriptome1319Y
F016909Metagenome / Metatranscriptome243Y
F022921Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_102021671F016909N/AAYDRLGRVDEAINVLENGPPQWQSVPAVRFWLGLSYALAGRKEHAATEFAAFRALAPKWNLSTTQRLWYRYFTPQFSDRVAALSREYGIPGK
Ga0318516_102021672F022921GGCGGMLKRYGDNALEESAARANELALAGDDDGATTWRRIMSAVTELANKTPPGRVN
Ga0318516_102021673F000315GGAMKSPPGPPMTLGNAANAKVRLIVWCKTCGRQVEPEPAAMAARYGADTPVLDWRERLVCSECGGRQVDMVGTVTERR
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