Scaffold Ga0318516_10092569

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10092569
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1699
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000792	Metagenome / Metatranscriptome	890	Y
F002887	Metagenome / Metatranscriptome	523	Y
F004262	Metagenome / Metatranscriptome	446	Y
F008680	Metagenome / Metatranscriptome	329	Y
F027296	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100925691	F027296	N/A	INMIHPDEANEVHTAAAHAIAGFQLADIAFGVLVRNGILPKSDAERLLKQAIAANRTRHPGNQAAAELLAVVLQTVSKFHPAPRQ
Ga0318516_100925692	F000792	AGG	MRERVLLFCLLGLVLIATIILVTAPGAVTWTLALID
Ga0318516_100925693	F002887	AGGAGG	MAPEPKPKIARLVFAVGMALTILAAMTWAMAEAIYPIYQPQLPLLY
Ga0318516_100925694	F004262	GGAG	MKRIINGFEVDWASERVFAEQQTAPNYGYLFEVSADRKRIVRCAHISAIGGDCDNLNRDAERLEKDARHAVEEFLGCERESGGLLGWWRRRQKIA
Ga0318516_100925695	F008680	N/A	VATAAEDCLSTTIWSGGAAAGLYLGSGLILAFLVHTHYPGVLGLREWIRVVLSWPLIFFLRSK