NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10089812

Scaffold Ga0318516_10089812


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10089812 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1724
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009379Metagenome / Metatranscriptome318Y
F025424Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100898122F009379AGGAGMPDDTAAPVPVWSVKFFRDLRSLTPTRLAYISRSSEAEVAQRALECMADEEAARVEICRVLLNPPILADGAEYWLD
Ga0318516_100898123F025424N/AMRDEIARLAKALEPSFTAPEDAELAATMMVMALRYELGQPATEADQLRYRAALERLPKGSTATPRVVFVSPYDQKTDPHWRVTFTVGPTRYESSRRFGSVAEAENYATDFLARLRGEINR

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