Scaffold Ga0318516_10089163

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10089163
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1730
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001362	Metagenome / Metatranscriptome	714	Y
F001404	Metagenome / Metatranscriptome	704	Y
F003338	Metagenome / Metatranscriptome	493	Y
F006088	Metagenome / Metatranscriptome	382	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100891631	F001404	GGAG	MRKTTLGAVAAALIVTGFGVWAASPARVSPSIGQGIEPFKLMVNAKDLSRAELV
Ga0318516_100891633	F001362	AGCAGG	MPTPKQQRRRALELLEASIDGCTEAIMLAYGFKTGLLVELVNAELATATIERMVIGRRGVKVVRMRITAAGRQALSKLRWP
Ga0318516_100891634	F006088	AGGA	MSSERDACLRKADDAKRRATQATEPSIKSAYEKVAEHWMLLARLESIVAAEKNSEDA
Ga0318516_100891635	F003338	N/A	MPTRRHYRHPNPDRRRALELLAGSRYGYTKAILRAHGFSIDMMVELVKAGLATTKRERMVADGRQTSVVRVRITEAGRQALAKMSK