Scaffold Ga0318516_10088992

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10088992
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1731
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003971	Metagenome / Metatranscriptome	459	Y
F005460	Metagenome / Metatranscriptome	400	Y
F067071	Metagenome	126	N
F085275	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100889921	F085275	N/A	RGRWLRRASQFIRSTSLNICFCTRGTDMRERVLLFCLLGLVLTVTMILVIAPGAVTWALALIE
Ga0318516_100889922	F003971	GAGG	MNYLPSSLIIVALASQAMIWHSLSTIRDAIQQTNAIVLAACGSDERPCQVAAHPGQIELGEIMVRTRVSDGFSCGYSRYNPCWIKASGEDGLVGP
Ga0318516_100889923	F005460	GGAGG	MPVEAIVLPDGNYYLPKTDEVIPADMATPSPDDRFHHCYYPMFAMANGFDPNGPVWERKLKTRCFFAPMNSS
Ga0318516_100889926	F067071	AGG	MIYGPKTEAILAVALTVASGGWLILVLLGYLESLGWGHVLGLFALFGIGVASLLTGKRRTGPR