Scaffold Ga0318516_10086814

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10086814
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1753
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004783	Metagenome / Metatranscriptome	423	Y
F018846	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100868141	F018846	AGGA	MQVKCTKCSEPIALSDVIESSDGRLSHMDCQRPRMLTVEERALLFVYCFGHAVAFCLNCDLRFRMAELAADALGSRTNLCPHCRRDLTQSARAHVYSCAILPAEVRLKAQAVREAAQHLVKESQQLRDTSDVLIREAEALLFERLGSLREAMSQRTAF
Ga0318516_100868142	F004783	GGAGG	MQNVQDQLTILLRAYSTIRFCDACLALKMGAFPRDVREAVALIGNGFQISSGKCSECLQEKTVVRALAA