NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10079323

Scaffold Ga0318516_10079323


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10079323 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1831
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085987Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100793234F085987AGGAGMTNRHERRKAATTSRKKLPQLNAATLDQHFEDALRRVRAEFERTGEMHAGFECVTDGESFQIPAYWPDRGAKAQACAALRDSFRRRKVNRYVFASEGWVGKTPGFRPTDDPDRGECVQVIAVERNGLRRYAFAEITRNGATASLGPWKVSGDVPGSWLLELLEDGYSDRPRKEEPPPVPRLSARDVQTLMYEDPAQGTEFRDSFEICDQLGDLLADQVQNADSDALAKFMALESILRSIVQDMGSPKGIGAFARFLRDHPDIFPMFATV

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