NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10073524

Scaffold Ga0318516_10073524


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10073524 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1899
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000461Metagenome / Metatranscriptome1108Y
F002604Metagenome / Metatranscriptome544Y
F006474Metagenome / Metatranscriptome372Y
F020500Metagenome / Metatranscriptome223Y
F041989Metagenome / Metatranscriptome159N

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100735241F020500N/AEQATDIPLPSPAIEVLALEAISRDLGIAELIGQSLVAAINKDMIHKILRD
Ga0318516_100735242F006474GGAGGMPGTEDDEPEMSFRRGYQQGVIDIFCTIERFLDPATREVLQSWIEKDVYIWRVKAMLGRPPKWRLNMLAGPRSAP
Ga0318516_100735243F000461AGCAGMTSLTTMDKLLFWLGIGAAQKGAGSNKRTDSRHWVISLVAGILLALLIAAGAFILLVGQR
Ga0318516_100735244F002604GGAGGMLSKLSIIGTFAAIIMIPTALSAQMGGGVNPGVHVGGAVNPGATVRGAVERGIPGPDFGTWRSPGTNKHRSHHRHSAAPTKQRR
Ga0318516_100735245F041989AGGAGMSKVENLQTTNRAKPFPCVSVALVVLAMFVLSWLAAKGVRNNLQTPLIFAGLCLPIFIAELRNHQNKWAIIVFDAVPVITYAFGYFVLRGPVLTGSMVLWLAGFGVSICIWFAALVWACTRVRLR
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