Scaffold Ga0318516_10063804

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10063804
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2031
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008646	Metagenome / Metatranscriptome	330	Y
F031728	Metagenome / Metatranscriptome	181	N
F034278	Metagenome	175	Y
F046918	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100638041	F046918	AGGAG	MAMTTRQSTKTITMPSATMASATEESVPERVTQRKPEGGRFRLQVDRQTKGSYATYSYCVTNLG
Ga0318516_100638042	F008646	GAG	MMNKSPKTRMELEALVLTELRAAPQCSGAVHVTVVAYDDYRVGATWEVASCNPGTSAPEHCERALCNIVRRLQQHFDITPT
Ga0318516_100638043	F034278	AGGAG	VAEYLMTLAANYLELAERALRLYEPATAARRQHIKVMQKE
Ga0318516_100638045	F031728	GGAG	MFNNGHEQLAKCPSQGLLRPGRFFWARAVSWGIVFGIVLWIAYKFVKGVGIDSGLDGSSGVPTVLGVLAAL