Scaffold Ga0318516_10031592

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10031592
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2798
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001249	Metagenome / Metatranscriptome	737	Y
F009437	Metagenome / Metatranscriptome	318	Y
F016044	Metagenome / Metatranscriptome	250	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100315922	F016044	AGG	MLPRCSRRTPTFTGKSEHRSKGLTLRPTGLGSAADKDRRDYTVFSGEFAVGRIYEERAAPADLQWFWAITGIFGTPADMRMDGHAPTLESAEIELGETWRTWLTWARLTEIGGGKA
Ga0318516_100315923	F009437	AGGAGG	MLSYASYCQDQAIDCARRARLARSPEIVAHCRSLEYRWLRLAERAQATGGALGHERDLAAATLIPLCDETAATCPVDYGKRAGELIARGARSLRATLRQKKSAPPREPNGS
Ga0318516_100315924	F001249	GGAG	MVGALGYKVFPLGETIMVKHGALSKSHVYKLLRSKDARVRRAAFTLLETSNPRLRRNSELFIEITRFIWDANPSYEVYQEFTKRHFQARYKVHELIGARLKIEKQKQQRAAADHVTDNTRHSEGGFFKRLFGRPSRSGQGGEASWSQARRGA