Scaffold Ga0318516_10028797

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10028797
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2912
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005101	Metagenome / Metatranscriptome	412	Y
F007168	Metagenome / Metatranscriptome	356	Y
F015010	Metagenome / Metatranscriptome	258	Y
F029059	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100287971	F007168	GGCGG	MQEKIGYCRQKAAECAARAQEAADKDTRELFLKFRNSWLNAAKRYESSSTPAPDESPERRPASFAHELSARDWRERPNDARTDTTAS
Ga0318516_100287972	F005101	GAG	MKEELTTILEAMRAAQGELADYLVSADRNAELTIAKLVGILERREVIRAMRLLRACKGVGGAPQPMLAEAS
Ga0318516_100287973	F029059	GGA	MGRSDQYRRYAAECLEMASVTHDPKARAALLQMAQVWLRLASQRTRHNTEEKVDHGGA
Ga0318516_100287974	F015010	GGAGG	METSTEYRRFAQECRRLARDAKTERHRSIMEDMARAWDQLAKETDDEVSHAPP