NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10026837

Scaffold Ga0318516_10026837


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10026837 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3006
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000037Metagenome / Metatranscriptome4230Y
F000792Metagenome / Metatranscriptome890Y
F009284Metagenome / Metatranscriptome320Y
F029231Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_1002683710F000037N/ALEKDYLVLKRASASRSSSEWSDDDFDVLCDGVVVGRIMKAAAVPVGMPWMWTLAYDYHEDRTLTHGYAATREDAMAAFAKSWRRE
Ga0318516_100268373F029231N/AMDRFATPSECWEQVARCRTRADAAADERLQAVWISMALIWTKLAAHKERLQRLNA
Ga0318516_100268376F009284GAGGMVKMTKDEMVEWFKSAPEGSRHQRMLWAARKIARLTGVTEGGAYQVLLGALIEAERLPRGSILGFSMTADE
Ga0318516_100268378F000792AGGMREHLLPFCLLGLVLTATIILVIAPGAVTWALALIE

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