Scaffold Ga0318516_10012810

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10012810
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4104
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000461	Metagenome / Metatranscriptome	1108	Y
F003298	Metagenome / Metatranscriptome	495	Y
F005086	Metagenome / Metatranscriptome	412	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100128103	F003298	GAG	MTFKMKILFPIMSSLLFVVPSAAAEFTYQEYTKTPEVWKRGFVFGISQYMSAVAQPDEEAPYPVRTAFQRCLASSTDTLLVRQVEAYVAANPANSKGPMVPIIMRTFFNLCRAEIEKAQSPKPAPSHR
Ga0318516_100128105	F005086	GAGG	VIYRVFMNDEDYVVVYADSPEGAMLKLRDAGLEPVKAEPFDAHPRRSKGAAPAR
Ga0318516_100128106	F000461	AGGCGG	MGNLLFWLGIGAAQKGAGSKEIKASRHWVMSLVAGILLALVIAAGAFILLVSQQ