Scaffold Ga0318516_10010474

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10010474
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4459
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001831	Metagenome / Metatranscriptome	628	Y
F011157	Metagenome / Metatranscriptome	294	Y
F036134	Metagenome	170	Y
F089991	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100104742	F089991	N/A	MAKSSPEKKAPAEVRALPMDLQLGDRLADERSEWQVIGRPYATGGGKTVHVRVESLKQPGVTEIRSWGAHERVGIHRATSAEGKRRD
Ga0318516_100104743	F036134	AGGAG	LASALSGDAAGLHWASPMSHLDDEGRDLDERTGPAGPTETPRLWRIAGPHPPEWRETFLRLAAETAEGRMLAPAFHGNLLSFNAQPQGGNALRLVKDLMVQATFAVEHLGCGGVKSYVGDTRISMTCTCGAEIVRRLSG
Ga0318516_100104744	F001831	N/A	VVSPFVKASPGALVCGVIVFLGACTLANTPQQELAYARWAQCRSLAGELLRIDLDGRITFRSSTAGGRQEVVQCLAEADRSGPPLPAPVAVGLPGGP
Ga0318516_100104746	F011157	GGAG	MLVRDGGDSGPLGAGRRLDAKWAAIVTLALVLAGCAHASGLRYTFTPCNPDFQRAVVACFLQAGGAWPAEAYDFYADSGMVEKQWKQQYESCMFRRGYNQIDEPKMWQPKERFNGSEGWPWPNDPPKSAWTWVRAAGTGDRHYYDVVCEP