Scaffold Ga0318516_10008220

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10008220
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4919
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000535	Metagenome / Metatranscriptome	1044	Y
F008680	Metagenome / Metatranscriptome	329	Y
F048534	Metagenome / Metatranscriptome	148	Y
F049353	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100082202	F049353	N/A	MSSRSDEYRQKAAEAKNRAAQTSSRPIKRAFQEVARNWLLLAEQMEWLDRQRSSRRDEDTSN
Ga0318516_100082206	F048534	GGA	MPKKRPDKQQNQEEPPVSLGRHMPQPAPVDDEAFARRAGEIIGNSNTSLHKARDAGGNKRLRRSG
Ga0318516_100082207	F000535	GAGG	MSTLRTHFTFRVDTWTPDGESIVEHVAGVEDYQVALATFLAACQRWPGTPITLRQGARVIEDSRRLRTA
Ga0318516_100082209	F008680	GGTGG	VATADRVSTTIWSGGAAVGLYLGSGLILAFLVHANYPGALGLREWIRVILSWPLIFFLRS