Scaffold Ga0318516_10003299

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0318516_10003299

Scaffold Ga0318516_10003299

Overview

Basic Information
Taxon OID	3300031543 Open in IMG/M
Scaffold ID	Ga0318516_10003299 Open in IMG/M
Source Dataset Name	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6930
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017283	Metagenome	241	Y
F067307	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100032997	F017283	GAG	VIINPLKWKYESRVGLLVSAIAGAGFGILIGYGLLGTLIWALVGAVILGGAFYFGRAAYEGSGEKDRLR
Ga0318516_100032999	F067307	N/A	MRGGWSRTSRPTSSPGTPSLQSAIWEDDVRALLIVVAIALGGCAAQRLNFSMYTRTDGRPVDAAKQQAALAQCKGEAVSAPLDPQGVDWGRKEKIIIDACMARSGYIQAQQ

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