Scaffold Ga0318516_10002649

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10002649
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7500
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016843	Metagenome	244	Y
F045914	Metagenome	152	Y
F060216	Metagenome	133	Y
F060639	Metagenome	132	Y
F062393	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_1000264910	F062393	AGGGGG	MDAEAYDRAWRIEQRAEELFKRDYPSGSFARRLPQFRSSYPDPVGEYYRQLAAKELSSQ
Ga0318516_1000264911	F060216	AGGAG	MTPEMISAQHRAAAAFNDVLSAARIAIAIEALAKIAAEPGRAIEIVENSLTAIEVILRPSELAEPVGST
Ga0318516_100026493	F016843	AGGAG	MPRYLIERQYLLPVYQHLAIEAPDLDTACREALDDGQHDWEDAQEDYESSRPATIVSAIEIAAEEEWLIANESQYERSGLIYDGSRELIEIPREFTERDPLAELAEVLERSDCGKGRVLIDGDDLKRLKSMAGMGIDQ
Ga0318516_100026494	F060639	GGA	MTLFFVHWPMEVEADIADRHLTCPHCADDWESFDGPERAIIGRTGPRRRCPSCGSWLDCPETTNAV
Ga0318516_100026499	F045914	AGGAG	MAYVVIQQHKFGRMYLCGWSKRWGATVCANPFVAIKFSTEDEAKLARDHAATRCPLFTDGRPIDWQILELPPGQPRRDEDVQ