NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10000567

Scaffold Ga0318516_10000567


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10000567 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12127
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004828Metagenome / Metatranscriptome422Y
F005101Metagenome / Metatranscriptome412Y
F007168Metagenome / Metatranscriptome356Y
F029059Metagenome / Metatranscriptome189Y
F033313Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_1000056710F029059AGGGGGMGRSDQYRRYAAECQEMASVIHDPKARVTLLHMAQVWLRLAGQGKLQDAEEKSAQGDA
Ga0318516_1000056712F033313N/AVRRVIVGLDVPIRAILENDHAFGPEDVANLTAAFEAALTRLGLVDRRDPLTSAVAKAIIRRAKDGERDPEKLCDGALKILGK
Ga0318516_1000056715F004828AGAAGGMRSKSDHAWRMAAECAKLAQGADEKDEREFYVRMRDSWITVANRYEFLDAVDEHGTPAERPRSAAGQYIPHPVSRSLDRRRGSASRQGR
Ga0318516_100005678F007168AGGGGGMWQKIGYRRQKASECAARAQEATDKETRELFLRFRDSWLSAARRYEASAAAAAGETTECPPSSFAPAPSARDWRESPNDARTDTTAERLGAC
Ga0318516_100005679F005101GAGMKDELTTILDGMRAAQAELADYLVSADRNAELTIAKLVGILDRREVVRAMRLLRALERPGGAPQRTLAEAS
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