Basic Information | |
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Taxon OID | 3300031543 Open in IMG/M |
Scaffold ID | Ga0318516_10000278 Open in IMG/M |
Source Dataset Name | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14733 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
Source Dataset Sampling Location | ||||||||
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Location Name | Puerto Rico: Rio Grande | |||||||
Coordinates | Lat. (o) | 18.321 | Long. (o) | -65.8172 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F029373 | Metagenome / Metatranscriptome | 188 | N |
F031180 | Metagenome | 183 | N |
F070410 | Metagenome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0318516_100002781 | F031180 | AGGAG | MQIGHPALEIAEERLDWFTYDIEPDGTQICVIRPARQCNDGVVLGRRASQLLQVLLNEIAQDNTIPFPQARQAVLRALRRAHDQRHPTD |
Ga0318516_100002785 | F070410 | GAGG | MTDPSSGGATLRTAPAMLNSAPVLQRGLDRNVLLHGIAAQRRRLAELETSMVEACERAAVRGACRKVRMHDHHTWDEATWQRYLEAVARLEPDYMPQMRRVLRDIHRFQRLLTLPIASAHAA |
Ga0318516_100002787 | F029373 | GGAGG | MPTTVYTLLCQTDRTGHVLAVFTDRAQAAEVARANAATHAERLRRQDEKTFKAPIADDVYQVHVEDLGSNLTVFIRHRFLDEAETYRWLVDSFELVPHRQ |
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