Scaffold Ga0308149_1017386

Overview

Basic Information

• Taxon OID: 3300031542
• Scaffold ID: Ga0308149_1017386
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_331_5m (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 899
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 80.9595
  • Long. (^o): -132.1842
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039169	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308149_10173861	F039169	N/A	RLYVVGDDYEPAPSVDQQGWEPEHLVDCVKEGGETGNGWKTKRLDADEIGPWEAGTLPADTAEVVYEFASALWVNKIDAYGSNETVAKSKSAILYVGAADGNVSATNPCDDAAWEQVGDEMFFETENNAQFIRGNKVTWLPERSGVCWKIKVFGFPSSEPVCGCAYASSYHGDLITETNPCNEECEKQTQVGLDEIHFENWDWLGIAGPGNQKDSETEKGTDYDKPAYVPANGQRR