Scaffold Ga0307380_10671100

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10671100
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 879
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004988	Metagenome / Metatranscriptome	416	Y
F015532	Metagenome / Metatranscriptome	254	Y
F092702	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_106711001	F015532	GAGG	MILQDDKIMRHEIPNRMMSATFTLPIDDRKVVGIVNYTATEEGIIPMALWVKIKPTDS
Ga0307380_106711002	F092702	N/A	MVVNFRYIDKLNNTIDTMWHEMEQVKDTNIKLYQFIEEHGDDITGR
Ga0307380_106711004	F004988	N/A	MESELVETICPRCNGNGYIRIMPVVAGVFDKATETDCPMCEEIVTHMGQRITTHSGYVKLPIKDTRKNIEGGRESKTKWSGETLPEVGK