NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10587287

Scaffold Ga0307380_10587287


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10587287 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)961
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F055684Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0307380_105872871F055684N/AQPEGIRIGDVNHPASIFWCWSKEQLAEVGIKPYTPASVPAGYRVTGAYNEEVDGEVFERFNLEAIPQPEPTPEVISQPELTPEEPVNDAN
Ga0307380_105872872F000635GAGGMTLTEIAQYAGEKIGKTDADTLTFLQKSASLNYRRVWNFAAWRETVTTSTYSVGTASRTVSLGSNVENPLSVAYNDSELQAMDLATIVSQDANLLDEDTTGTPAFYYFKGRNTGGTAELDLYPKLETTSTNTLLVVQKLQCLTRSNYVVDFPPSNNAISDELRLPHVSHVVLALTHADALERERQYGKAQVVTQAANADLAAMANYELSQVGGMKQITPVGLGDLGIEEII
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