Scaffold Ga0307380_10241114

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10241114
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1715
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055287	Metagenome / Metatranscriptome	139	N
F066267	Metagenome / Metatranscriptome	127	N
F080647	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_102411141	F055287	N/A	RHKSNYEAIQQTTGSTARRLNLTVEQLTDENKRLLDSLNVKSGKVQFVYRTKWRTETDTFEVEVERWHIYLLPCPIQTFTVDTNCTKLTALLHPDSAAKVTLTTDYDLSVVGYWKRPGKWFGAKLWNGLLGKKEAYIKIASPCFKDSAVYLNKFSQAQ
Ga0307380_102411143	F080647	N/A	MIETLLLTSMFIFGLWLSTAEGMIGDELRWLFISRFPELAKPVVDCPTCMASVYGTLAYWGQHLISGNTTDLLTFIGWPVFVICLAGFNGIILKLAKWS
Ga0307380_102411144	F066267	N/A	MVISKIANWLVKNHPDAVLTALKPDSKNWKAGCEFMVEMDGHKYYRFRDSGDVPLVRYKEIQAVLIQLDNRLTSDELLNILSIARESVVAAIEGQSRKDRGKGLQQCLWAIQEAESRHKELGLHTDLIVELAALNLIRGDENPFEINEGIQAEKLRLFKREFTSHDFFLSAGMNEFLPNA