Scaffold Ga0307380_10205037

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10205037
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1900
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004546	Metagenome / Metatranscriptome	433	Y
F020114	Metagenome / Metatranscriptome	226	Y
F035757	Metagenome / Metatranscriptome	171	Y
F102562	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_102050371	F004546	GGAGG	MKYEEEYPFNEFPWKLVHKDAKETRKCYFQSEEHMKKHIERYKLNKKDYKIGYKYE
Ga0307380_102050374	F035757	GGAG	MDNKFAVILSSIVDNATVRIQLVVNTPMSAEQLVTYYKCKSITISDVYVEQL
Ga0307380_102050375	F102562	GAGG	MTDEEFLKQTATKVANIIHMPLGDIEPIKLIQMVVSLDILLGGDKELMIHWVNTHNKHLGYCPGAHLTDARMDDTLRYLDAMVEH
Ga0307380_102050376	F020114	GGAGG	MKPQTFKHITRCIDKHGVHHLDALDDYGRHWYATMQQKEEPWLTYTQHWELRTH