Scaffold Ga0307380_10175422

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10175422
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2098
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010878	Metagenome / Metatranscriptome	298	Y
F015793	Metagenome / Metatranscriptome	252	Y
F032867	Metagenome / Metatranscriptome	179	Y
F054777	Metagenome / Metatranscriptome	139	N
F102114	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_101754221	F015793	N/A	IKTFEDRYNNNKKFHHVNLMGLKFRVANNKRSKRKSNKVFYSTSRGIVFNLLPSRYLCLITK
Ga0307380_101754224	F054777	AGGAG	MTNKINDETLQRLYEDVVADDEAGLIDDDVNEIAHLYNLHADDDRDEILQIIAENEFYEQFT
Ga0307380_101754225	F032867	AGGAG	MDDMTQMIDDLIDNHYRVQHLIGTEADESEYLADIEEEDDE
Ga0307380_101754226	F102114	AGGAGG	MSDYIVVIKVEICECKDKQEAINFVADNIGLSEFNLEIDIEEEDDDI
Ga0307380_101754228	F010878	AGGAG	MKITAWNIGIVWEDGTEENIGDIPDWVANRVDEFLNELEEVDDEC