Scaffold Ga0307380_10150824

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10150824
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2309
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F022084	Metagenome	216	Y
F051564	Metagenome	144	Y
F056177	Metagenome	138	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_101508242	F022084	GGTGG	MEHTEYLKRLFNHIESKGYTIECECEGEDITKDDALTQVDEAVIYIIDKDGHSLGWIHWTYWNDWDESIADYTLELEKILELDKFIDGIMKEVK
Ga0307380_101508243	F056177	AGGAGG	MKTLTKEYTVYDFEDLKQDDELCDRIYQKFWIDNPNNINSWADENINSFKKFAETLQMNFDYSLSNDEYETRQCYIKLSPSYDLDNKDYKYLLQNYKGNGYCFCDDLANFTNTLLDKKEYKVLCEWSTNDFVLDIQNKMFEMWFADNQDYFSKEMFLNHVESNEWEFDENSNLF
Ga0307380_101508246	F051564	GGAGG	MSIPKQMLKEWCETYDEAIETLDYLANRSVGTAKEEIKESLEDFFIDNGLMSEEEFKQEVKEXKLGAVQ
Ga0307380_101508247	F059441	AGGAGG	MKTWSSTITYTVFDMGRECETEEEYREWVKETFIEDHNIYLRDDEITNIEREELYNE
Ga0307380_101508248	F003976	GGAGG	MSRLYNDYYFEKEDVLDTLEKLEMSVRFLNVWVNEPMGLENAKYVLEKNANRKFDWFDRNMVKELLEEEDDESIXDNS