Scaffold Ga0307380_10137520

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10137520
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2449
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022653	Metagenome / Metatranscriptome	213	N
F035290	Metagenome / Metatranscriptome	172	N
F094525	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_101375206	F094525	GAGG	MITIEGRTFLLTQQTEAIAFLEGMLYDLDRHALVFVSGYGMLLDDHKQLEEFLNNEPCAFIH
Ga0307380_101375208	F035290	GAGG	MIIEKKENCDYYLEVYHWDYTIVDKVVTKKEKNVLSFIGLYRDYELEFEDQLTILTNLRENLISAYMNWPDGEVTVSLVIKEEGVNL
Ga0307380_101375209	F022653	AGGGGG	MIIFKRLFGWAVSVFNDILEGNLTDTEKDNLFWLFVTLWGLVMVTFFILHESTGALFDL