Scaffold Ga0307380_10135350

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10135350
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2473
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035747	Metagenome	171	Y
F054011	Metagenome	140	Y
F067693	Metagenome	125	Y
F090326	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_101353504	F054011	N/A	MYNHIREFHKDQLLHVVNHYMTSEMRNHLMRECPAAYNSLCGRIVMTSQVEDTGRKIIERPTDVNLSDFD
Ga0307380_101353505	F035747	N/A	MTAYNTELLLDREFMRRMIRAYEQDLLQLVNETPDHPGGDWAQEHLQMLELLRQQTFSPLKQSITF
Ga0307380_101353507	F067693	N/A	MAQFIHYCAQNDRNGNPQRCFVLLDPDDGNPIAAWNEGYYGHNAVPGVWRRNAYHAERIDCSVRKYKELLRTLPSPDWAHDVPGYSHLRTLCN
Ga0307380_101353508	F090326	N/A	MNTFTLATGRQVEKNATHCVAVKTRGRWNHQWFKSDRGAQNEIKRLRSYSADTIAYYDIQEFKLIKPN